bucky.model.derived_epi_params#

Calculate derived SEIR parameters from the input parameterization.

Module Contents#

Functions#

add_derived_params(epi_params, structure_cfg)

Add the derived params that are calculated from the rerolled ones.

calc_Reff(m, n, Tg, Te, r)

Calculate the effective reproductive number.

calc_Te(Tg, Ts, n, f)

Calculate the latent period.

calc_Ti(Te, Tg, n)

Calcuate the infectious period.

calc_beta(Te)

Derive beta from Te.

calc_gamma(Ti)

Derive gamma from Ti.

bucky.model.derived_epi_params.add_derived_params(epi_params, structure_cfg)[source]#

Add the derived params that are calculated from the rerolled ones.

bucky.model.derived_epi_params.calc_Reff(m, n, Tg, Te, r)[source]#

Calculate the effective reproductive number.

bucky.model.derived_epi_params.calc_Te(Tg, Ts, n, f)[source]#

Calculate the latent period.

bucky.model.derived_epi_params.calc_Ti(Te, Tg, n)[source]#

Calcuate the infectious period.

bucky.model.derived_epi_params.calc_beta(Te)[source]#

Derive beta from Te.

bucky.model.derived_epi_params.calc_gamma(Ti)[source]#

Derive gamma from Ti.